Install DagsHub:
pip install dagshubTo stream this data directly on DagsHub
from dagshub.streaming import DagsHubFilesystem
fs = DagsHubFilesystem(".", repo_url="https://test.dagshub.com/DagsHub-Datasets/open-cravat-dataset")
fs.listdir("s3://opencravat-store-aws")Description
OpenCRAVAT is a module variant annotation tool developed by KarchinLab at Johns Hopkins. This dataset is a mirror of the OpenCRAVAT store available at https://store.opencravat.org. You can configure OpenCRAVAT to use this mirror by editing the “cravat-system.yml” file. The path to this file is in the first output line of the command “oc config system”. In that file, change the value of “store_url” to “https://opencravat-store-aws.s3.amazonaws.com”.
Additional information
Documentation
Update frequency
Data is mirrored daily. Update frequencies of individual annotators depend on the update schedule
of the source data.
Managed by
KarchinLab, Potomac IT Group
License
License varies per-annotator. Commercial users must check the “commercial_warning” field
in the module_name.yml file of each annotator.
