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Datasets » Biology » GATK Structural Variation (SV) Data

GATK Structural Variation (SV) Data Dataset for Machine Learning

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pip install dagshub
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To stream this data directly on DagsHub

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://test.dagshub.com/DagsHub-Datasets/gatk-sv-data-dataset")

fs.listdir("s3://gatk-sv-data-us-east-2")
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Description

This dataset holds the data needed to run a structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data in AWS.

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Additional information

Documentation

https://github.com/LokaHQ/aws-open-data/blob/main/gatk-sv/documentation.md

Update frequency

Every 3 months

Managed by

https://loka.com/

License

https://github.com/LokaHQ/aws-open-data/blob/main/LICENSE

Explore this dataset on DagsHub

Tags

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