Install DagsHub:
pip install dagshubTo stream this data directly on DagsHub
from dagshub.streaming import DagsHubFilesystem
fs = DagsHubFilesystem(".", repo_url="https://test.dagshub.com/DagsHub-Datasets/cptac-3-dataset")
fs.listdir("s3://gdc-cptac-phs001287-2-open")Description
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) is a national effort to accelerate the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis, or proteogenomics. CPTAC-3 is the Phase III of the CPTAC Initiative. The dataset contains open RNA-Seq Gene Expression Quantification data.
Additional information
Update frequency
Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases,
although this dataset may not be updated at every release.
Managed by
License
NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
