Datasets » Biology » Cancer Cell Line Encyclopedia (CCLE)

Cancer Cell Line Encyclopedia (CCLE) Dataset for Machine Learning

Install DagsHub:

pip install dagshub

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To stream this data directly on DagsHub

from dagshub.streaming import DagsHubFilesystem

fs = DagsHubFilesystem(".", repo_url="https://test.dagshub.com/DagsHub-Datasets/ccle-dataset")

fs.listdir("s3://gdc-ccle-2-open")

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Description

The Cancer Cell Line Encyclopedia (CCLE) project is an effort to conduct a detailed genetic characterization of a large panel of human cancer cell lines. The CCLE provides public access to genomic data, visualization and analysis for over 1100 cancer cell lines. This dataset contains RNA-Seq Aligned Reads, WXS Aligned Reads, and WGS Aligned Reads data.

Explore this dataset on DagsHub

Additional information

Documentation

https://portals.broadinstitute.org/ccle/about

Update frequency

Genomic Data Commons (GDC) is source of truth for this dataset; GDC offers monthly data releases,
although this dataset may not be updated at every release.

Managed by

https://ctds.uchicago.edu/

License

NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies